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10. Visualization of biomacromolecules

Task no. 2

In PDB database search out entry 1O3R. Using program Jmol view the 3D structure (Jmol is accessible via JENA link). At first try to work with this application. Then solve following tasks:

  1. Try to measure distance between the C-terminal and N-terminal amino acid of a single polypeptide chain.
  2. Show the macromolecular structure in this way: Proteins should be rendered as ribbons with colour differentiation of secondary structures. DNA should be rendered in Spacefill mode with colour differentiation of nucleotides. In conclusion export and send the image of 3D structure.
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Last update: 08.12.2022 Authors: Matej Stano and Lubos Klucar, Institute of Molecular Biology, SAS Bratislava
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